Construct a StateTransitionData object

Thin wrapper around MultiAssayExperiment() that adds the required slots. All MAE arguments are forwarded.

Usage

StateTransitionData(
  experiments = list(),
  colData = S4Vectors::DataFrame(),
  ground_truth = NULL,
  sampling_design = new("SamplingDesign"),
  ...
)

Arguments

experiments

list or ExperimentList (passed to MAE)

colData

DataFrame of sample-level metadata

ground_truth

a GroundTruth object, or NULL

sampling_design

a SamplingDesign declaration; defaults to migration-only "unspecified" until explicitly declared

...

additional arguments forwarded to MultiAssayExperiment()

Value

a validated StateTransitionData object